ImageJ and Fiji

How to run or download ImageJ using three options

For ImageJ Go to https://imagej.net/ij/index.html and note, download ImageJ Bundled with Java 8 and read the instructions for setup. You can also run ImageJ in browser only, no download required from https://ij.imjoy.io/ If running the download, and your computer prompts you for administrative authorization, contact IT for assistance. Java is a known mechanism for spreading malware and could be blocked by the computer anti-malware program.

If your computer has java installed download the platform independent version, unzip the folder and launch ImageJ from within the folder. If your computer does not have Java installed, download the ImageJ bundled with Java 8, unzip the folder and run ImageJ from within the folder. Note, make a short cut of ImageJ from the folder onto your desktop.

For Fiji Go to https://imagej.net/software/fiji/

Similar to ImageJ. Read all of the instructions provided at the website and note the Fiji like ImageJ comes with Java and will run independent, generally downloading the Windows version with JRE is sufficient. If you computer has Java installed, this is typically because other programs on your computer require Java, therefore please consult with IT if you have any questions.

Tech notes. In a managed computer environment users are restricted, they cannot install programs. Java is a well established program used in a multitude of applications, it is also a widely exploited program and therefore used to compromise computer security. Allowing IT security to manage Java on your computer and running the platform independent or no JRE version is the best compromise between meeting computer security needs and delivering a users ability to use ImagJ and Fiji tools.



Keywords:
imagej, fiji
Doc ID:
37266
Owned by:
David L. in Dermatology
Created:
2014-02-04
Updated:
2025-06-11
Sites:
Department of Dermatology